Book short notes

Foye's Principles of Medicinal Chemistry

Why drugs are built the way they are: structure, activity and metabolism.

Medicinal chemistry questions ask what a structural change does to activity or metabolism. These notes collect the structure-activity rules most often examined.

How this book helps in the exam

  • Structure-activity relationships of drug classes.
  • Prodrugs and the enzyme that activates them.
  • Metabolic reactions and the metabolites they form.
  • Stereochemistry and its effect on activity.

What the book covers

10 high-yield topics. Each has the points most often examined and links to practise them.

  1. 1Drug design principles

    • Lipinski's rule of five predicts oral absorption from molecular weight, logP and hydrogen bond counts.
    • A pharmacophore is the minimum arrangement of features needed for activity.
    • Lead optimisation improves potency, selectivity and kinetics.
    • Higher lipophilicity improves membrane crossing but can raise toxicity and metabolism.
  2. 2Prodrugs

    • Enalapril is an ester prodrug hydrolysed to enalaprilat.
    • Levodopa crosses the blood-brain barrier and is converted to dopamine.
    • Clopidogrel and codeine need CYP activation.
    • Prodrugs improve absorption, taste, stability or targeting.
  3. 3Bioisosterism

    • Bioisosteres replace a group with one of similar size and electronics to keep activity.
    • A tetrazole replaces a carboxylic acid in ARBs such as losartan.
    • Fluorine often replaces hydrogen to block metabolism.
    • Bioisosteres can reduce toxicity or improve kinetics.
  4. 4Phase I metabolism

    • Oxidation by CYP450 is the most common phase I reaction.
    • Esters are hydrolysed faster than amides, so procaine is shorter acting than lidocaine.
    • N-dealkylation can give active metabolites, such as diazepam to desmethyldiazepam.
    • Paracetamol forms the toxic NAPQI by oxidation when glutathione runs out.
  5. 5Phase II metabolism

    • Glucuronidation is the main conjugation reaction; neonates have low capacity (grey baby syndrome with chloramphenicol).
    • Acetylation is polymorphic (isoniazid, hydralazine, procainamide).
    • Methylation by TPMT inactivates thiopurines.
    • Morphine-6-glucuronide is an active conjugate that builds up in kidney failure.
  6. 6Stereochemistry

    • Enantiomers can differ in activity; S-warfarin is more potent than R-warfarin.
    • Esomeprazole and levocetirizine are single-enantiomer versions of racemic drugs.
    • Thalidomide enantiomers interconvert in the body.
    • Receptors are chiral, so they can tell enantiomers apart.
  7. 7SAR of beta-lactams

    • The intact beta-lactam ring is essential for activity.
    • Bulky side chains (methicillin, flucloxacillin) protect against penicillinase.
    • An amino group (ampicillin, amoxicillin) widens the spectrum to some Gram-negatives.
    • Clavulanic acid and tazobactam inhibit beta-lactamases.
  8. 8SAR of CNS drugs

    • Benzodiazepines need an electron-withdrawing group at position 7 for activity.
    • Phenothiazines with a chlorine at position 2 (chlorpromazine) increase antipsychotic potency.
    • Barbiturates need two substituents at carbon 5 for sedative activity.
    • Increasing lipophilicity speeds onset in the CNS (thiopental).
  9. 9SAR of cardiovascular drugs

    • Beta blockers share an aryloxypropanolamine side chain; the S-isomer is active.
    • Dihydropyridines need the 1,4-dihydropyridine ring; oxidation to pyridine destroys activity.
    • ACE inhibitors carry a zinc-binding group (sulfhydryl, carboxylate or phosphinate).
    • Captopril's sulfhydryl group is linked to rash and taste disturbance.
  10. 10Drug name stems

    • -olol: beta blocker; -pril: ACE inhibitor; -sartan: ARB.
    • -statin: HMG-CoA reductase inhibitor; -prazole: proton pump inhibitor.
    • -mab: monoclonal antibody; -tinib: tyrosine kinase inhibitor.
    • -gliptin: DPP-4 inhibitor; -gliflozin: SGLT2 inhibitor.

These are PharmaPrep's own notes on the knowledge this book teaches. No text, tables or figures are reproduced from it. Read the book for full explanations, and check doses and laws against current official sources.

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